Beller Research Group
for Soft Matter and Biological Physics

Beller Research Group
for Soft Matter and Biological Physics#

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Our group explores the basic physics underlying complex phenomena in ordered soft materials, biological matter, and living systems. We are part of a vibrant and expanding community of Soft and Biological Matter researchers at the Johns Hopkins University Department of Physics & Astronomy.

We use theoretical approaches combining statistical physics, elasticity theory, and material geometry and topology, alongside computational approaches such as mesoscale relaxational methods, coarse-grained Brownian dynamics, and stochastic front propagation simulations. Spatial self-organization, complex geometries, and topological defects are recurring themes in our research. Much of our work is in close collaboration with experimentalists from Physics, Materials Science, and Chemical Engineering backgrounds.

Our current research areas include:#

  • Active matter with liquid crystalline order

    How do emergent collective motions depend on material geometry, topology, and non-equilibrium force generation?

  • Self-assembly in ordered soft materials

    How do material order, interfacial effects, and chirality determine spontaneous spatial patterning and structure formation in liquid crystals and soft solids?

  • Biological population genetics

    What can statistical physics teach us about a population’s changing spatial structure and its evolutionary consequences?

Latest news#

Mateusz awarded Swiss Government Excellence Scholarship

May 19, 2026 Mateusz Ratman portrait

Mateusz Ratman was awarded a Swiss Government Excellence Scholarship to fund his Ph.D. studies at the Ecole Polytechnique Fédérale de Lausanne (EPFL). Congratulations, Mateusz!

Cody to join faculty of UMass Boston

May 1, 2026 Cody Schimming portrait

Cody Schimming has accepted a faculty position at UMass Boston's Department of Physics. He starts his independent research group in September, 2026. Congratulations, Cody!

Mateusz wins Kerr Award

April 30, 2026 Mateusz Ratman portrait

Mateusz Ratman is a winner of the department's 2026 Donald E. Kerr Undergraduate Award. The Kerr Award, established in 1979, acknowledges outstanding graduating physics majors who have distinguished themselves through their performance in the classroom, their accomplishments in research, and their other positive contributions to the department. Congratulations, Mateusz!

Article on chiral active filaments published

March 4, 2026
Schematic of chiral active filament

In a paper published in Phys. Rev. E, we show that semiflexible filaments with chiral activity in the form of off-tangent self-propulsion can exhibit multistable dynamics including straight and curved trajectories.

Article on active nematic hydrodynamics published

November 3, 2025 Simulation of active Beris-Edwards nematodynamics with nematic locking

With the group of Kevin Mitchell at UC Merced, we argue in a paper published in Soft Matter for introducing a new physical principle, dubbed "nematic locking", to the standard equations of nematic hydrodynamics in order to more accurately model microtubule-based active nematics.

Jane earns her Ph.D.

August 29, 2025 Jane Garcia cuts cake post-defense

Jane B.D.M. Garcia successfully defends her Ph.D. thesis, "Self-assembly of topological defects and nanoparticles in liquid crystals." Congratulations, Dr. Garcia!

Jimmy earns his Ph.D.

August 27, 2025 Jimmy and Dan with sign celebrating Jimmy's defense

Jimmy Gonzalez Nuñez successfully defends his Ph.D. thesis, "Evolution in expanding populations: from random landscapes to predictable patterns." Congratulations, Dr. Gonzalez! He will join Shenshen Wang's group at UCLA as a postdoc.

Paper on templated self-assembly in liquid crystals published

August 7, 2025 Simulated liquid crystal director field and defects

In collaboration with the Gharbi Lab at UMass Amherst, we demonstrate that the smectic-nematic liquid crystal phase transition coupled to a geometrically patterned confining boundaries offers a rich toolset for self-assembly of defects and nanoparticles. The paper is published in Nanoscale.

Jane wins poster prize at GRC

July 10, 2025 Jane wins poster prize

Jane Garcia wins a top poster prize at Liquid Crystals Gordon Research Conference. The award is a signed copy of Jonathan Selinger's new textbook. Congratulations, Jane!

Preprint on rotating active nematics posted

June 30, 2025 Schematic of time cholesteric dynamics with off-tangent propulsion

We present evidence that off-tangent propulsion can explain the "time cholesteric" rotation of active nematic order in microtubule gliding assays, offering a new design principle for active matter of self-propelled filaments. The preprint is posted to arXiv.

Louise wins Sam Edwards Thesis Prize

June 30, 2025 Louise Head portrait

Louise Head was awarded the 2025 Sam Edwards PhD Thesis Prize by the Institute of Physics. Congratulations, Louise!

Preprint on active nematic hydrodynamics posted

June 26, 2025 Simulation of active Beris-Edwards nematodynamics with nematic locking

With the group of Kevin Mitchell at UC Merced, we argue for introducing a new physical principle, dubbed "nematic locking", to the standard equations of nematic hydrodynamics in order to more accurately model microtubule-based active nematics. The preprint is posted to arXiv.

Paper on evolutionary selection in heterogeneous environments published in J. Roy. Soc. Interface

June 18, 2025 Heatmap of mutant spatial frequency in a range expansion with nonzero mutation rate for a deleterious mutation in a landscape of hotspots.

Using simulations of a meta-population model along with ideas from geometrical optics, we show that quenched-random structure in the environment significantly enhances the survival of deleterious mutants, in a paper published in the *Journal of the Royal Society Interface*.

Preprint posted on 3D nematic order and defects in gliomas

April 17, 2025 director field and disclination line in 3D glioma cell orientations

In gliomas, a deadly type of brain tumor, cancer cells exhibit 3D quasi-long-range nematic order with disclination lines, as we and collaborators show in a preprint is posted to bioRxiv.

APS Honor for Jimmy

March 18, 2025
Jimmy receiving GSNP honor

Jimmy Gonzalez Nuñez is a finalist for the GSNP Graduate Student Speaker Award at the 2025 American Physical Society Global Physics Summit. Congratulations, Jimmy!

Preprint on defect braiding in active nematics posted

March 13, 2025
Golden braid defect trajectories in a confined active nematic

We use simulations to establish the conditions and mechanism for self-propelled topological defects in active nematics to spontaneously following periodic braids rather than “topological chaos”, resulting in optimal fluid mixing. The preprint is posted to arXiv.

2024
Preprint on cell shape-sorting in bacterial colonies posted

January 25, 2025 Simulated bacterial colony of long (brown) and short (blue) cell types.

Simulations of bacterial monolayers with two cell shape phenotypes show that more elongated cells tend to dominate the colony periphery. The preprint is posted to bioRxiv and arXiv.

Jimmy Gonzalez Nuñez awarded Dean’s Dissertation Prize Fellowship for Spring 2025

December 2, 2024

Congratulations, Jimmy!

Mateusz gives presentation on liquid crystals topology at regional math conference

November 9, 2024 Mateusz Ratman presenting a slide on liquid crystals topology at a projector screen

Mateusz Ratman gave his pedagogical presentation at the Fall 2024 Regional Undergraduate Math Research Conference hosted by Towson University.

Preprint on evolutionary selection in heterogeneous environments posted

October 9, 2024 Heatmap of mutant spatial frequency in a range expansion with nonzero mutation rate for a deleterious mutation in a landscape of hotspots.

Using simulations of a meta-population model along with ideas from geometrical optics, we show that quenched-random structure in the environment significantly enhances the survival of deleterious mutants. The preprint is posted to bioRxiv.

Madhuvanthi Athani successfully defends her Ph.D. thesis

August 21, 2024

congratulations sign for Madhuvanthi's Ph.D. defense

Congratulations, Dr. Athani! Her thesis is entitled "Emergent, Decaying, and Spinning Nematic Order in Collective Motion of Active Semiflexible Filaments."

Paper on range expansions in heterogeneous environments published in PNAS

August 13, 2024

In a paper published in Proceedings of the National Academy of Sciences, we show that when a biological population expands through a landscape with randomly distributed resources, the newly colonized area is dominated by a small fraction of geneaological lineages that followed paths of least time.

Paper on active filaments published in PRR

June 24, 2024

In a paper published in Physical Review Research, we find through agent-based simulations that long-range nematic order in "gliding assays" is transient rather than dynamically stable and requires the self-propelled filaments to glide over each other.

Paper on tubular crystal defect reactions is published

May 7, 2024

In a paper in Physical Review Materials, we show that wrapping a 2D crystalline sheet into a tube enables defects to interact in unusual sequences of topological transformations.

Dr. Louise Head joins the group

May 1, 2024

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Louise arrives after earning her Ph.D. in the group of Prof. Tyler Shendruk at the University of Edinburgh. Welcome, Louise!

Dr. Chanania Steinbock joins the group

February 1, 2024

Chanania Steinbock

Chanania arrives after earning his Ph.D. in the group of Prof. Eytan Katzav at the Racah Institute of Physics. Welcome, Chanania!

Paper on mixing dynamics in active nematics published

January 8, 2024

Our article in Physical Review E shows that active nematic defect dynamics, which are normally chaotic, also admit a periodic orbit that maximizes the chaotic mixing of the active nematic fluid.

2023
Preprint on range expansions in heterogeneous environments posted

October 19, 2023

In a new preprint posted to the arXiv, we show that when a biological population expands through a landscape with randomly distributed resources, the newly colonized area is dominated by a small fraction of geneaological lineages that followed paths of least time.

Preprint on defect dynamics in tubular crystals posted

September 8, 2023

In a new preprint posted to the arXiv, we show that wrapping a 2D crystalline sheet into a tube enables defects to interact in unusual sequences of topological transformations.

Commentary on liquid crystal order in cell monolayers published

September 7, 2023

This "News and Views" commentary in Nature Physics explores the impact on active matter research of a recent paper by Luca Giomi and collaborators on quantifying coexisting liquid crystal symmetries in cell monolayers.

Preprint on active nematic self-mixing posted

August 21, 2023

In a new preprint posted to the arXiv, we show that active nematic defect dynamics, which are normally chaotic, also admit a periodic orbit that maximizes the chaotic mixing of the active nematic fluid.

Madhuvanthi Athani wins a best poster award!

August 17, 2023

Her poster titled “Symmetry and stability of orientationally ordered collective motions of self-propelled, semiflexible filaments” won second place for Best Poster Presentation at the program “Soft and Living Matter: from Fundamental Concepts to New Material Design” at the International Centre for Theoretical Sciences, Tata Institute of Fundamental Research.

Jane B.D.M. Garcia wins DSOFT Travel Grant!

July 18, 2023

Preprint on liquid crystal-mediated self-assembly posted

June 5, 2023

In a new preprint posted to the arXiv, we reveal in numerical modeling how highly multistable patterns of liquid crystal defects can be generated using geometrically structured confinement and thermally controlled phase transitions, and how these patterns can be exploited to guide the self-assembly of nanoparticles.

Preprint on active liquid crystals posted

June 5, 2023

In a new preprint posted to the arXiv, we find in agent-based simulations that long-range nematic order in "gliding assays" is transient rather than dynamically stable, and may require some motion in the third dimension.

Jimmy Gonzalez Nuñez speaks at Physics of Life symposium

April 21, 2023

Jimmy Gonzalez Nuñez was among a handful of speakers selected to present their research at the CUNY Graduate Center’s “Physics of Life: Students and Postdocs Edition” symposium. He gave a talk entitled “Environmental vs demographic noise in range expansions”.

2022
Jimmy Gonzalez Nuñez speaks at Isaac Newton Institute

October 14, 2022

Population genetics in active matter paper published in Frontiers in Physics

July 12, 2022

Active nematic dynamics in growing colonies of immotile bacteria may help slow the population's loss of genetic diversity --- paper published in Frontiers in Physics.

Tubular crystals paper published in PNAS

February 2, 2022

Crystalline sheets rolled up into tubes can be programmed with reconfigurable shapes through the placement and motion of defects in the crystalline lattice --- paper published in PNAS.

Jimmy Gonzalez Nuñez awarded DBIO Shirley Chan Student Travel Grant

January 26, 2022
Jimmy Gonzalez Nuñez awarded a DBIO Shirley Chan Student Travel Grant for the APS March Meeting!

2021
Active matter paper published in PNAS

December 21, 2021

Mobility of motor proteins enhances emergent active nematic dynamics in a microtubule gliding assay --- paper with Hirst, Dasbiswas, and Gopinathan groups (UC Merced) published in PNAS.

LC spontaneous chirality paper published in Soft Matter

December 1, 2021

In nematic liquid crystals with low twist elastic constant, spontaneous chirality changes the orientations of rod-like colloidal particles embedded in the fluid --- paper with Yodh (Penn) and Collings (Swarthmore) groups published in Soft Matter.

Crystallization on a cylinder paper published in ACS Applied Nano Materials

October 11, 2021

A new kind of defect found in crystallization on a cylinder (or: "the frustration of meeting yourself on the other side") --- paper with Manoharan and Rycroft groups (Harvard University) published in ACS Applied Nano Materials.